Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284495-SRR8284496/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  254,619,950
 Normal Paired: 247,106,887 (97.05%)
 Chimeric Paired: 2,065,480 (0.81%)
 Chimeric Ambiguous: 498,400 (0.20%)
 Unmapped: 4,949,183 (1.94%)
 Ligation Motif Present: 46,904 (0.02%)
Alignable (Normal+Chimeric Paired): 249,172,367 (97.86%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-24T09:13:45,784]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 96,564,997 (37.93%)
PCR Duplicates: 152,607,370 (59.94%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 106,983,783
Intra-fragment Reads: 48,451,366 (19.03% / 50.17%)
Below MAPQ Threshold: 26,611,102 (10.45% / 27.56%)
Hi-C Contacts: 21,502,529 (8.44% / 22.27%)
 Ligation Motif Present: 12,683  (0.00% / 0.01%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,450,964  (2.14% / 5.64%)
Intra-chromosomal: 16,051,565  (6.30% / 16.62%)
Short Range (<20Kb): 10,933,303  (4.29% / 11.32%)
Long Range (>20Kb): 5,118,202  (2.01% / 5.30%)